Matlab (Focus on Image processing and Analysis).

FSL (FMRIB Software Library).

FreeSurfer (Brain structures segmentation).

SurfRelax (Brain Flattening).

MRIcro (MRI and CT image analysis).

Analyze (quantitative analysis of MRI images).

JIM software.

ExploreDTI.

SliceOmatic.

ImageJ (Java based image analysis program).

3D Slicer (software package for visualization and image analysis).

MR tools for fMRI analysis.

Statistical Parametric Mapping (SPM).

SPSS (Statistical Package).

Linux and Unix operating systems.

Microsoft windows, Word, Excel, and PowerPoint.

LaTex (a document markup language).

Drawing Softwares (Photoshop, Inkscape, and Gimp).